datasources
datasources
Repository with the BridgeDb data source. The reason to abstract this out is that other tools no longer depend on updates of the BridgeDb Java library to use the information.
The following URLs can be used in downstream tools:
- https://bridgedb.github.io/datasources/datasources.tsv
- https://bridgedb.github.io/datasources/datasources_headers.tsv
- https://bridgedb.github.io/datasources/organisms.tsv
It includes interoperability layers with identifiers.org and Bioregistry.io.
Testing
There are tests for data integrity that can be run with the following commands in the shell:
$ pip install tox
$ tox